Gautam A. Dantas: search on Z-Library

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1

Close Encounters of Three Kinds: Bacteriophages, Commensal Bacteria, and Host Immunity

Keen, Eric C., Dantas, Gautam

Journal:

Trends in Microbiology

Year:

2018

Language:

english

File:

PDF, 2.54 MB

english, 2018

2

Missing Microbes: How the Overuse of Antibiotics is Fueling our Modern Plagues. By Martin J. Blaser. 288 pp. New York: Henry Holt and Company. 2014. $28.00 (cloth), $16.00 (paper), $14.99 (e-book).

Journal:

American Journal of Human Biology

Year:

2015

Language:

english

File:

PDF, 50 KB

english, 2015

3

Spatiotemporal dynamics of multidrug resistant bacteria on intensive care unit surfaces

D’Souza, Alaric W., Potter, Robert F., Wallace, Meghan, Shupe, Angela, Patel, Sanket, Sun, Xiaoqing, Gul, Danish, Kwon, Jennie H., Andleeb, Saadia, Burnham, Carey-Ann D., Dantas, Gautam

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 3.52 MB

english, 2019

4

Next-generation approaches to understand and combat the antibiotic resistome

Crofts, Terence S., Gasparrini, Andrew J., Dantas, Gautam

Journal:

Nature Reviews Microbiology

Year:

2017

Language:

english

File:

PDF, 996 KB

english, 2017

5

Multiscale Evolutionary Dynamics of Host-Associated Microbiomes

Ferreiro, Aura, Crook, Nathan, Gasparrini, Andrew J., Dantas, Gautam

Journal:

Year:

2018

Language:

english

File:

PDF, 1.25 MB

english, 2018

6

Prairie plants harbor distinct and beneficial root-endophytic bacterial communities

Adu-Oppong, Boahemaa, Mangan, Scott A., Stein, Claudia, Catano, Christopher P., Myers, Jonathan A., Dantas, Gautam, Armas, Cristina

Journal:

Year:

2020

File:

PDF, 1.99 MB

2020

7

Tackling antibiotic resistance

Bush, Karen, Courvalin, Patrice, Dantas, Gautam, Davies, Julian, Eisenstein, Barry, Huovinen, Pentti, Jacoby, George A., Kishony, Roy, Kreiswirth, Barry N., Kutter, Elizabeth

Journal:

Nature Reviews Microbiology

Year:

2011

Language:

english

File:

PDF, 131 KB

english, 2011

8

Bacterial phylogeny structures soil resistomes across habitats

Forsberg, Kevin J., Patel, Sanket, Gibson, Molly K., Lauber, Christian L., Knight, Rob, Fierer, Noah, Dantas, Gautam

Journal:

Year:

2014

Language:

english

File:

PDF, 3.33 MB

english, 2014

9

Developmental dynamics of the preterm infant gut microbiota and antibiotic resistome

Gibson, Molly K., Wang, Bin, Ahmadi, Sara, Burnham, Carey-Ann D., Tarr, Phillip I., Warner, Barbara B., Dantas, Gautam

Journal:

Nature Microbiology

Year:

2016

Language:

english

File:

PDF, 856 KB

english, 2016

10

Autologous Fecal Microbiota Transplantation as a Strategy to Prevent Colonization With Multidrug-Resistant Organisms Following Antimicrobial Therapy

Bulow, Christopher, D'Souza, Alaric, Hink, Tiffany, Wallace, Meghan, Reske, Kimberly, Sun, Xiaoqing, Kwon, Jennie H., Burnham, Carey-Ann D., Dantas, Gautam, Dubberke, Erik R.

Journal:

Open Forum Infectious Diseases

Year:

2015

Language:

english

File:

PDF, 132 KB

english, 2015

11

Structural and Functional Survey of Environmental Aminoglycoside Acetyltransferases Reveals Novel Functionality of Resistance Enzymes

Xu, Zhiyu, Stogios, Peter J, Quaile, Andrew, Forsberg, Kevin, Patel, Sanket, Skarina, Tatiana, Houliston, Scott, Arrowsmith, Cheryl, Dantas, Gautam, Savchenko, Alexei

Journal:

ACS Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 25.27 MB

english, 2017

12

Draft Genome Sequence of the Naturally Competent Bacillus simplex Strain WY10

Keen, Eric C., Bliskovsky, Valery V., Adhya, Sankar L., Dantas, Gautam

Journal:

Genome Announcements

Year:

2017

Language:

english

File:

PDF, 123 KB

english, 2017

13

Evaluation of Machine Learning and Rules-Based Approaches for Predicting Antimicrobial Resistance Profiles in Gram-negative Bacilli from Whole Genome Sequence Data

Pesesky, Mitchell W., Hussain, Tahir, Wallace, Meghan, Patel, Sanket, Andleeb, Saadia, Burnham, Carey-Ann D., Dantas, Gautam

Journal:

Frontiers in Microbiology

Year:

2016

Language:

english

File:

PDF, 2.85 MB

english, 2016

14

The Gut Microbiome as a Reservoir for Antimicrobial Resistance

Anthony, Winston E, Burnham, Carey-Ann D, Dantas, Gautam, Kwon, Jennie H

Journal:

The Journal of Infectious Diseases

Year:

2020

File:

PDF, 731 KB

2020

15

The Tetracycline Destructases: A Novel Family of Tetracycline-Inactivating Enzymes

Forsberg, Kevin J., Patel, Sanket, Wencewicz, Timothy A., Dantas, Gautam

Journal:

Chemistry & Biology

Year:

2015

Language:

english

File:

PDF, 2.72 MB

english, 2015

16

Characterization of Wild and Captive Baboon Gut Microbiota and Their Antibiotic Resistomes

Tsukayama, Pablo, Boolchandani, Manish, Patel, Sanket, Pehrsson, Erica C., Gibson, Molly K., Chiou, Kenneth L., Jolly, Clifford J., Rogers, Jeffrey, Phillips-Conroy, Jane E., Dantas, Gautam, Lozupone,

Journal:

Year:

2018

Language:

english

File:

PDF, 2.30 MB

english, 2018

17

A concerted systems biology analysis of phenol metabolism in Rhodococcus opacus PD630

Roell, Garrett W., Carr, Rhiannon R., Campbell, Tayte, Shang, Zeyu, Henson, William R., Czajka, Jeffrey J., Martín, Hector García, Zhang, Fuzhong, Foston, Marcus, Dantas, Gautam, Moon, Tae Seok, Tang,

Journal:

Metabolic Engineering

Year:

2019

Language:

english

File:

PDF, 1.22 MB

english, 2019

18

Synthesis of Polyazamacrocyclic Compounds via Modified Richman−Atkins Cyclization of β-Trimethylsilylethanesulfonamides

Hoye, Rebecca C., Richman, Jack E., Dantas, Gautam A., Lightbourne, Marissa F., Shinneman, L. Scott

Journal:

Journal of Organic Chemistry

Year:

2001

Language:

english

File:

PDF, 57 KB

english, 2001

19

The effects of antibiotics on the microbiome throughout development and alternative approaches for therapeutic modulation

Langdon, Amy, Crook, Nathan, Dantas, Gautam

Journal:

Genome Medicine

Year:

2016

Language:

english

File:

PDF, 817 KB

english, 2016

20

Functional Metagenomic Investigations of the Human Intestinal Microbiota

Moore, Aimee M., Munck, Christian, Sommer, Morten O. A., Dantas, Gautam

Journal:

Frontiers in Microbiology

Year:

2011

Language:

english

File:

PDF, 431 KB

english, 2011

21

Impact of investigational microbiota therapeutic RBX2660 on the gut microbiome and resistome revealed by a placebo-controlled clinical trial

Kwak, Suryang, Choi, JooHee, Hink, Tiffany, Reske, Kimberly A., Blount, Kenneth, Jones, Courtney, Bost, Margaret H., Sun, Xiaoqing, Burnham, Carey-Ann D., Dubberke, Erik R., Dantas, Gautam

Journal:

Year:

2020

File:

PDF, 1.86 MB

2020

22

Mis-translation of a Computationally Designed Protein Yields an Exceptionally Stable Homodimer: Implications for Protein Engineering and Evolution

Gautam Dantas, Alexander L. Watters, Bradley M. Lunde, Ziad M. Eletr, Nancy G. Isern, Toby Roseman, Jan Lipfert, Sebastian Doniach, Martin Tompa, Brian Kuhlman, Barry L. Stoddard, Gabriele Varani, Dav

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 1.15 MB

english, 2006

23

2847. Comparative Genomics and Clonal Tracking of Multi-drug-Resistant Uropathogens Implicates the Fecal Microbiome as a Potential Reservoir for Recurrent Urinary Tract Infections

Thanert, Robert, Reske, Kimberly, Hink, Tiffany, Wallace, Meghan, Wang, Bin, Schwartz, Drew, Burnham, Carey-Ann, Seiler, Sondra, Cass, Candice, Dubberke, Erik R, Dantas, Gautam, Kwon, Jennie H

Journal:

Open Forum Infectious Diseases

Year:

2019

File:

PDF, 2.57 MB

2019

24

A Large Scale Test of Computational Protein Design: Folding and Stability of Nine Completely Redesigned Globular Proteins

Gautam Dantas, Brian Kuhlman, David Callender, Michelle Wong, David Baker

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.96 MB

english, 2003

25

Antibiotic perturbation of the preterm infant gut microbiome and resistome

Gasparrini, Andrew J., Crofts, Terence S., Gibson, Molly K., Tarr, Phillip I., Warner, Barbara B., Dantas, Gautam

Journal:

Year:

2016

Language:

english

File:

PDF, 981 KB

english, 2016

26

Draft Genome Sequence of a bla NDM-1 - and bla PME-1 -Harboring Pseudomonas aeruginosa Clinical Isolate from Pakistan

Irum, Sidra, Potter, Robert F., Kamran, Rubina, Mustafa, Zeeshan, Wallace, Meghan A., Burnham, Carey-Ann D., Dantas, Gautam, Andleeb, Saadia, Stewart, Frank J.

Journal:

Microbiology Resource Announcements

Year:

2019

Language:

english

File:

PDF, 138 KB

english, 2019

27

Breakpoint beware: reliance on historical breakpoints for Enterobacteriaceae leads to discrepancies in interpretation of susceptibility testing for carbapenems and cephalosporins and gaps in detection of carbapenem-resistant organisms

Yarbrough, Melanie L., Wallace, Meghan A., Potter, Robert F., D’Souza, Alaric W., Dantas, Gautam, Burnham, Carey-Ann D.

Journal:

European Journal of Clinical Microbiology & Infectious Diseases

Year:

2019

File:

PDF, 1.07 MB

2019

28

High-resolution Structural and Thermodynamic Analysis of Extreme Stabilization of Human Procarboxypeptidase by Computational Protein Design

Gautam Dantas, Colin Corrent, Steve L. Reichow, James J. Havranek, Ziad M. Eletr, Nancy G. Isern, Brian Kuhlman, Gabriele Varani, Ethan A. Merritt, David Baker

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.71 MB

english, 2007

29

A functional metagenomic approach for expanding the synthetic biology toolbox for biomass conversion

Sommer, Morten OA, Church, George M, Dantas, Gautam

Journal:

Molecular Systems Biology

Year:

2010

Language:

english

File:

PDF, 798 KB

english, 2010

30

KPC and NDM-1 Genes in Related Enterobacteriaceae Strains and Plasmids from Pakistan and the United States

Pesesky, Mitchell W., Hussain, Tahir, Wallace, Meghan, Wang, Bin, Andleeb, Saadia, Burnham, Carey-Ann D., Dantas, Gautam

Journal:

Emerging Infectious Diseases

Year:

2015

Language:

english

File:

PDF, 237 KB

english, 2015

31

Novel resistance functions uncovered using functional metagenomic investigations of resistance reservoirs

Pehrsson, Erica C., Forsberg, Kevin J., Gibson, Molly K., Ahmadi, Sara, Dantas, Gautam

Journal:

Frontiers in Microbiology

Year:

2013

Language:

english

File:

PDF, 1.50 MB

english, 2013

32

Plasticity, dynamics, and inhibition of emerging tetracycline resistance enzymes

Park, Jooyoung, Gasparrini, Andrew J, Reck, Margaret R, Symister, Chanez T, Elliott, Jennifer L, Vogel, Joseph P, Wencewicz, Timothy A, Dantas, Gautam, Tolia, Niraj H

Journal:

Nature Chemical Biology

Year:

2017

Language:

english

File:

PDF, 2.92 MB

english, 2017

33

Checkpoint Checkmate: Microbiota Modulation of Cancer Immunotherapy

Keen, Eric C., Crofts, Terence S., Dantas, Gautam

Journal:

Clinical Chemistry

Year:

2018

Language:

english

File:

PDF, 84 KB

english, 2018

34

Cotrimoxazole prophylaxis increases resistance gene prevalence and α-diversity but decreases β-diversity in the gut microbiome of HIV-exposed, uninfected infants

D’Souza, Alaric W, Moodley-Govender, Eshia, Berla, Bertram, Kelkar, Tejas, Wang, Bin, Sun, Xiaoqing, Daniels, Brodie, Coutsoudis, Anna, Trehan, Indi, Dantas, Gautam

Journal:

Clinical Infectious Diseases

Year:

2019

File:

PDF, 1.44 MB

2019

35

Genomic and functional techniques to mine the microbiome for novel antimicrobials and antimicrobial resistance genes

Adu-Oppong, Boahemaa, Gasparrini, Andrew J., Dantas, Gautam

Journal:

Annals of the New York Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 363 KB

english, 2016

36

bla IMP-27 on transferable plasmids in Proteus mirabilis and Providencia rettgeri

Potter, Robert F., Wallace, Meghan A., McMullen, Allison R., Prusa, Jerome, Stallings, Christina L., Burnham, Carey-Ann D., Dantas, Gautam

Journal:

Clinical Microbiology and Infection

Year:

2018

Language:

english

File:

PDF, 332 KB

english, 2018

37

Infant diet and maternal gestational weight gain predict early metabolic maturation of gut microbiomes

Baumann-Dudenhoeffer, Aimee M., D’Souza, Alaric W., Tarr, Phillip I., Warner, Barbara B., Dantas, Gautam

Journal:

Nature Medicine

Year:

2018

Language:

english

File:

PDF, 4.95 MB

english, 2018

38

Population Structure, Antibiotic Resistance, and Uropathogenicity of Klebsiella variicola

Potter, Robert F., Lainhart, William, Twentyman, Joy, Wallace, Meghan A., Wang, Bin, Burnham, Carey-Ann D., Rosen, David A., Dantas, Gautam, Parkhill, Julian

Journal:

Year:

2018

Language:

english

File:

PDF, 5.85 MB

english, 2018

39

1H,13C and15N Resonance Assignments of URNdesign, a Computationally Redesigned RRM Protein

Neil Dobson, Gautam Dantas, Gabriele Varani

Journal:

Journal of Biomolecular NMR

Year:

2005

Language:

english

File:

PDF, 197 KB

english, 2005

40

Comparative transcriptomics elucidates adaptive phenol tolerance and utilization in lipid-accumulating Rhodococcus opacus PD630

Yoneda, Aki, Henson, William R., Goldner, Nicholas K., Park, Kun Joo, Forsberg, Kevin J., Kim, Soo Ji, Pesesky, Mitchell W., Foston, Marcus, Dantas, Gautam, Moon, Tae Seok

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 6.65 MB

english, 2016

41

Functional Characterization of Bacteria Isolated from Ancient Arctic Soil Exposes Diverse Resistance Mechanisms to Modern Antibiotics

Perron, Gabriel G., Whyte, Lyle, Turnbaugh, Peter J., Goordial, Jacqueline, Hanage, William P., Dantas, Gautam, Desai, Michael M., Brown, Sam Paul

Journal:

Year:

2015

Language:

english

File:

PDF, 1.94 MB

english, 2015

42

Multidrug-resistant plasmids repress chromosomally encoded T6SS to enable their dissemination

Di Venanzio, Gisela, Moon, Ki Hwan, Weber, Brent S., Lopez, Juvenal, Ly, Pek Man, Potter, Robert F., Dantas, Gautam, Feldman, Mario F.

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

Language:

english

File:

PDF, 1.08 MB

english, 2019

43

Persistent metagenomic signatures of early-life hospitalization and antibiotic treatment in the infant gut microbiota and resistome

Gasparrini, Andrew J., Wang, Bin, Sun, Xiaoqing, Kennedy, Elizabeth A., Hernandez-Leyva, Ariel, Ndao, I. Malick, Tarr, Phillip I., Warner, Barbara B., Dantas, Gautam

Journal:

Nature Microbiology

Year:

2019

Language:

english

File:

PDF, 6.96 MB

english, 2019

44

Genomic Prediction of Antimicrobial Resistance: Ready or Not, Here It Comes!

Ransom, Eric M, Potter, Robert F, Dantas, Gautam, Burnham, Carey-Ann D

Journal:

Clinical Chemistry

Year:

2020

File:

PDF, 513 KB

2020

45

ChemInform Abstract: Synthesis of Polyazamacrocyclic Compounds via Modified Richman—Atkins Cyclization of β-Trimethylsilylethanesulfonamides.

Rebecca C. Hoye, Jack E. Richman, Gautam A. Dantas, Marissa F. Lightbourne, L. Scott Shinneman

Journal:

Year:

2001

File:

PDF, 33 KB

2001

46

Antibiotics and the resistant microbiome

Morten OA Sommer, Gautam Dantas

Journal:

Current Opinion in Microbiology

Year:

2011

Language:

english

File:

PDF, 626 KB

english, 2011

47

Transcriptomic analysis illuminates genes involved in chlorophyll synthesis after nitrogen starvation inAcaryochlorissp. CCMEE 5410

Yoneda, Aki, Wittmann, Bruce J., King, Jeremy D., Blankenship, Robert E., Dantas, Gautam

Journal:

Photosynthesis Research

Year:

2016

Language:

english

File:

PDF, 2.24 MB

english, 2016

48

Semisynthetic Analogues of Anhydrotetracycline as Inhibitors of Tetracycline Destructase Enzymes

Markley, Jana L., Fang, Luting, Gasparrini, Andrew J., Symister, Chanez T., Kumar, Hirdesh, Tolia, Niraj H., Dantas, Gautam, Wencewicz, Timothy A.

Journal:

ACS Infectious Diseases

Year:

2019

File:

PDF, 11.57 MB

2019

49

Transcript Barcoding Illuminates the Expression Level of Synthetic Constructs in E. coli Nissle Residing in the Mammalian Gut

Crook, Nathan, Ferreiro, Aura, Condiotte, Zevin, Dantas, Gautam

Journal:

ACS Synthetic Biology

Year:

2020

File:

PDF, 3.21 MB

2020

50

Draft Genome Sequence of a Salmonella enterica Serovar Typhi Strain Resistant to Fourth-Generation Cephalosporin and Fluoroquinolone Antibiotics

Gul, Danish, Potter, Robert F., Riaz, Hurmat, Ashraf, Shifa Tariq, Wallace, Meghan A., Munir, Tehmina, Ali, Amjad, Burnham, Carey-Ann, Dantas, Gautam, Andleeb, Saadia

Journal:

Genome Announcements

Year:

2017

Language:

english

File:

PDF, 125 KB

english, 2017

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